Ultra-deep sequencing improves the detection of drug resistance in cellular DNA from HIV-infected patients on ART with suppressed viraemia.

Christophe RODRIGUEZ, ML Nere, Vanessa DEMONTANT, I Charreau, Mélanie MERCIER-DARTY, H Delagreverie, M Salmona, N de Castro, ML Chaix, JM Molina, C Delaugerre,

J Antimicrob Chemother. 01/11/2018;73(11) : 3122-3128 10.1093/jac/dky315

Drug resistance among patients who acquired HIV infection in a preexposure prophylaxis trial.

C Delaugerre, Christophe RODRIGUEZ, C Capitant, ML Nere, Mélanie MERCIER-DARTY, D Carette, G Pialoux, L Cotte, I Charreau, JM Molina, and the IPERGAY study group.

AIDS 23/10/2018;32(16) : 2353-2361 10.1097/QAD.0000000000001960.

Primary resistance of hepatitis B virus to nucleoside and nucleotide analogues

Stephane CHEVALIEZ, Christophe RODRIGUEZ, Lila POITEAU, Alexandre SOULIER, F Donati, Mélanie MERCIER-DARTY, C Pioche, V Leroy, V Brodard, F Zoulim, C Brouard, C Larsen, C Semaille, F Roudot-Thoraval, Jean-Michel PAWLOTSKY, Hepatology Reference Centers Laboratories Network for Chronic Hepatitis B Surveillance

J Viral Hepat 19/10/2018;- : - 10.1111/jvh.13025

Frequent antiviral treatment failures in patients infected with hepatitis C virus genotype 4, subtype 4r.

Slim FOURATI, Christophe RODRIGUEZ, Christophe HEZODE, Alexandre SOULIER, Isaac RUIZ, Lila POITEAU, Stephane CHEVALIEZ, Jean-Michel PAWLOTSKY,

Hepatology 19/08/2018;- : - 10.1002/hep.30225

Genotypic and phenotypic characteristics of Escherichia coli involved in transfusion-transmitted bacterial infections: implications for preventive strategies.

M Desroches, O Clermont, B Lafeuillade, Christophe RODRIGUEZ, Mélanie MERCIER-DARTY, G Royer, O Bouvet, N Ounnoughene, F Noizat-Pirenne, E Denamur, JW Decousser,

Transfusion 01/08/2018;58(8) : 1940-1950 10.1111/trf.14812.

Evaluation of different analysis pipelines for the detection of HIV-1 minority resistant variants.

M Perrier, N Desire, A Storto, E Todesco, Christophe RODRIGUEZ, M Bertine, Q Le Hingrat, B Visseaux, V Calvez, D Descamps, AG Marcelin, C Charpentier,

PLoS One 01/06/2018;13(6) : e0198334 10.1371/journal.pone.0198334.

Impact of HIV-1 minority variants on the virus response to a rilpivirine-based first line regimen

S Raymond, F Nicot, C Pallier, P Bellecave, A Maillard, MA Trabaud, L Morand-Joubert, A Rodallec, C Amiel, T Mourez, L Bocket, A Beby-Defaux, Magali BOUVIER-ALIAS, S Lambert-Niclot, C Charpentier, B Malve, A Mirand, J Dina, H Le Guillou-Guillemette, S Marque-Juillet, A Signori-Schmuck, F Barin, A Si-Mohamed, V Avettand Fenoel, C Roussel, V Calvez, K Saune, AG Marcelin, Christophe RODRIGUEZ, D Descamps, J Izopet, ANRS AC11 Resistance Study Group

Clin Infect Dis. 02/05/2018;66(10) : 1588-1594 10.1093/cid/cix1070.

A novel standardized deep sequencing-based assay for hepatitis C virus genotype determination.

Christophe RODRIGUEZ, Alexandre SOULIER, Vanessa DEMONTANT, Lila POITEAU, Mélanie MERCIER-DARTY, Magali BOUVIER-ALIAS, Jean-Michel PAWLOTSKY, Stephane CHEVALIEZ,

Sci Rep. 08/03/2018;8(1) : 4180 10.1038/s41598-018-22614-0.

Utility of ultra-deep sequencing for detection of varicella-zoster virus antiviral resistance mutations.

Mélanie MERCIER-DARTY, D Boutolleau, R Lepeule, Christophe RODRIGUEZ, S Burrel,

Antiviral Res. 01/03/2018;151 : 20-23 10.1016/j.antiviral.2018.01.008. 12/01/2018

The Odyssey of the Ancestral Escherich Strain through Culture Collections: an Example of Allopatric Diversification

M Desroches, G Royer, D Roche, Mélanie MERCIER-DARTY, D Vallenet, C Medigue, JP Bastard, Christophe RODRIGUEZ, O Clermont, E Denamur, JW Decousser,

mSphere 31/01/2018;3(1) : pii: e00553-17 10.1128/mSphere.00553-17.